Glyma17g14520 - SoyBase

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Report for Sequence Feature Glyma17g14520

Feature Type:	gene_model
Chromosome:	Gm17
Start:	11259508
stop:	11265539
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g14520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12080	AT	Annotation by Michelle Graham. TAIR10: AT-hook motif nuclear-localized protein 1 \| chr4:7239466-7241246 FORWARD LENGTH=356	SoyBase	E_val: 2.00E-126	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF02178	PFAM	AT hook motif	JGI		ISS
PF03479	PFAM	Domain of unknown function (DUF296)	JGI		ISS
UniRef100_B9RBU6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RBU6_RICCO	SoyBase	E_val: 2.00E-135	ISS
UniRef100_I1MUV6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MUV6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g14520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g14520

Paralog	Evidence	Comments
Glyma05g04040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g14520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g136200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g14520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g14520

Limit To All Plant Sequences

>Glyma17g14520.2   sequence type=transcript   gene model=Glyma17g14520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCAACAACTTTAATACTATTTTATACATTTCTCCACCAGATTCCAACCAAAACCAAATAATTATTTCCGTTAAAATATTATTTCCGGCATTAAATATTAATTCATTAAAATAATTTTTAATGCCCCCAGTTCAGTATATCTCCTTTTCCTCCCCTTTATTTTTTAATCTCAATTTGGACAGTCTTAGGAAAGTTAGGAACCCAATTACCTGAACAACAAAAACAAAGGATTCATTTTATCTGGCCATTTTCATTTCCCTTGGAAACTCAAAATATTTCAAATTTCACTCTTTCTTTCTGCACAATATTTTCCCATCTATTTTTTTCTTCTTCTCAAAACTCACATATTAGTATTTTCTCCCACAAAATTTCAGCTCATAATTTTTATTTTTCGATTTCATCCAATCCTGCTAATTTATTTTTAATGACGAAATTTACGCAAATGGTGCAAAGGTGAAGATTTTCCACATCTTGTTTCATGCCCAGCTCCTCAAGCTAGCTTTTAATTTTGATTTTTCTCATTTCCTGGCTTAAATTTTTCATCTTTTCTAAAAGAAAAAAAATCATTTCCCAGCAGCATAGCATAGTAGTAGAAGTTTTGGGTGATTGAGTTTGAAGAAGAAGAAAAAATATGAGATATTGATGTGTGGTTTTACTTTATGTTACGTGTGAGTGGTACTACTTCTCAAGTGTTTGAACATGGAGACCAGTGGCGGTGTTAGCGGCGGCGTTACGCTGGTGGGATCGGATGCTCCGTCGGACTACCATGTAGCTCCGAGGACCGACAACCCGGCTCCGGCAAGCGGATCCACGACGCAGATTCCGGCGACGGCGGGAAGTGTTCCGCCGTCGCCACATCCGCCACACACGGCGGCGATGGAGGCGTATCCGGCGAAGATGCCGGCGAAAAAGAAGAGGGGCCGGCCGAGAAAGTACGCACCGGATGGGTCGGTGACCATGGCGCTGTCTCCGAAGCCGATATCTTCCTCCGCTCCGTTGCCGCCGGTGATCGATTTCTCGTCGGAGAAGCGCGGAAAAATAAAACCAACTAGCTCCGTGAGCAAAGCCAAATTCGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTTACTCCCCATATCATCACTGTTAATTCTGGGGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCGCGAGCTATATGCATTCTTTCAGCTAATGGGGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACACTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCCGGCTCATTCATGCCAAGTGAAAGCGGAGGAACACGAAGCAGATCCGGTGGCATGAGTGTATCTTTGGCAAGCCCTGATGGACGTGTTGTAGGTGGTGGAGTAGCTGGTCTGTTGGTGGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAGCATGAGCAGAAGCCAAGAAAACAGAGACATGAGGTTATAACAAGTGTGATACCAGCTGCAGTTGTTCCAATCTCTACCCTTGATCCAGTGCCAATTCTATCAGCAGCGTCTTCCATCCGAAACGATAATTGGTCTGCTATGCCAGCAGAGGCCAAGAATAAGCCAGCTGACATTAACGTGTCGCTTCCTGCAGGGTAATTAACTTATAGATCTTCATTCCATCTGAATTTACATTTACTGCTGACAACATTGTAATGTGATGGATTCCTAGTTGTTGGCTTTGCTTTCCGTTGTTTGTTGTGTCTGTAATTGTTGACTTTCTACCGGGACCAGCATTGTTTTCAGAGGTTTACCAGCTTCCTGTTCTTGTAGAATTTGAGTTGGCTGATTAGGTATGCTTTTAATGCTGATGTTGTGACATGAACAACACTTTGATGTGATAGTTATTCATGAGAATCCATCTTCCCTTTGGAGTGATAGATTGCGCAATCCACGTTATTTCTATTAAGACAATATTCTTAATTTGAGAATGACCATTTCTATAATTATTGTACACCTTGTAACCACATAAGATTCTTGATC

Coding sequences of Glyma17g14520

Limit To All Plant Sequences

>Glyma17g14520.1   sequence type=CDS   gene model=Glyma17g14520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACCAGTGGCGGTGTTAGCGGCGGCGTTACGCTGGTGGGATCGGATGCTCCGTCGGACTACCATGTAGCTCCGAGGACCGACAACCCGGCTCCGGCAAGCGGATCCACGACGCAGATTCCGGCGACGGCGGGAAGTGTTCCGCCGTCGCCACATCCGCCACACACGGCGGCGATGGAGGCGTATCCGGCGAAGATGCCGGCGAAAAAGAAGAGGGGCCGGCCGAGAAAGTACGCACCGGATGGGTCGGTGACCATGGCGCTGTCTCCGAAGCCGATATCTTCCTCCGCTCCGTTGCCGCCGGTGATCGATTTCTCGTCGGAGAAGCGCGGAAAAATAAAACCAACTAGCTCCGTGAGCAAAGCCAAATTCGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTTACTCCCCATATCATCACTGTTAATTCTGGGGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCGCGAGCTATATGCATTCTTTCAGCTAATGGGGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACACTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCCGGCTCATTCATGCCAAGTGAAAGCGGAGGAACACGAAGCAGATCCGGTGGCATGAGTGTATCTTTGGCAAGCCCTGATGGACGTGTTGTAGGTGGTGGAGTAGCTGGTCTGTTGGTGGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAGCATGAGCAGAAGCCAAGAAAACAGAGACATGAGGTTATAACAAGTGTGATACCAGCTGCAGTTGTTCCAATCTCTACCCTTGATCCAGTGCCAATTCTATCAGCAGCGTCTTCCATCCGAAACGATAATTGGTCTGCTATGCCAGCAGAGGCCAAGAATAAGCCAGCTGACATTAACGTGTCGCTTCCTGCAGGGTTTGTCTTTATGTAG

>Glyma17g14520.2   sequence type=CDS   gene model=Glyma17g14520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACCAGTGGCGGTGTTAGCGGCGGCGTTACGCTGGTGGGATCGGATGCTCCGTCGGACTACCATGTAGCTCCGAGGACCGACAACCCGGCTCCGGCAAGCGGATCCACGACGCAGATTCCGGCGACGGCGGGAAGTGTTCCGCCGTCGCCACATCCGCCACACACGGCGGCGATGGAGGCGTATCCGGCGAAGATGCCGGCGAAAAAGAAGAGGGGCCGGCCGAGAAAGTACGCACCGGATGGGTCGGTGACCATGGCGCTGTCTCCGAAGCCGATATCTTCCTCCGCTCCGTTGCCGCCGGTGATCGATTTCTCGTCGGAGAAGCGCGGAAAAATAAAACCAACTAGCTCCGTGAGCAAAGCCAAATTCGAGTTGGAGAATTTAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTTACTCCCCATATCATCACTGTTAATTCTGGGGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCGCGAGCTATATGCATTCTTTCAGCTAATGGGGTCATATCAAGTGTCACACTTCGTCAGCCCGATTCTTCTGGGGGCACACTGACATATGAGGGACGGTTTGAAATTCTGTCTTTATCCGGCTCATTCATGCCAAGTGAAAGCGGAGGAACACGAAGCAGATCCGGTGGCATGAGTGTATCTTTGGCAAGCCCTGATGGACGTGTTGTAGGTGGTGGAGTAGCTGGTCTGTTGGTGGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAGCATGAGCAGAAGCCAAGAAAACAGAGACATGAGGTTATAACAAGTGTGATACCAGCTGCAGTTGTTCCAATCTCTACCCTTGATCCAGTGCCAATTCTATCAGCAGCGTCTTCCATCCGAAACGATAATTGGTCTGCTATGCCAGCAGAGGCCAAGAATAAGCCAGCTGACATTAACGTGTCGCTTCCTGCAGGGTAA

Predicted protein sequences of Glyma17g14520

Limit To All Plant Sequences

>Glyma17g14520.1   sequence type=predicted peptide   gene model=Glyma17g14520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METSGGVSGGVTLVGSDAPSDYHVAPRTDNPAPASGSTTQIPATAGSVPPSPHPPHTAAMEAYPAKMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPTSSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQRHEVITSVIPAAVVPISTLDPVPILSAASSIRNDNWSAMPAEAKNKPADINVSLPAGFVFM*

>Glyma17g14520.2   sequence type=predicted peptide   gene model=Glyma17g14520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METSGGVSGGVTLVGSDAPSDYHVAPRTDNPAPASGSTTQIPATAGSVPPSPHPPHTAAMEAYPAKMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSEKRGKIKPTSSVSKAKFELENLGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKQRHEVITSVIPAAVVPISTLDPVPILSAASSIRNDNWSAMPAEAKNKPADINVSLPAG*

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